PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g073670.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 871aa MW: 99041 Da PI: 6.7533 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.3 | 1.6e-10 | 59 | 127 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA+++GF++r+ + ++ k +f C k g r+ + ++ C+a+l+v+++ ++kw+vtk +++H+H+l+ Solyc06g073670.2.1 59 NFYDEYARRLGFNTRVFQFNRL-------KTDFLCDKVGLRRVSGES--------------CDAMLRVELKGQNKWVVTKYVKDHSHSLV 127 6***************998876.......789*********998877..............**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-7 | 59 | 127 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.5E-26 | 265 | 356 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.214 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.5E-9 | 543 | 577 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 871 aa Download sequence Send to blast |
MDVEEGNMNQ QGGITDDGDD EPSESGEANV NGRSNAPDGD NIVEPQMGMV FLSADQAKNF 60 YDEYARRLGF NTRVFQFNRL KTDFLCDKVG LRRVSGESCD AMLRVELKGQ NKWVVTKYVK 120 DHSHSLVYPS KVHHQRSHKH FAVTKKKVPE NNQGVGVVPS GVMYVSVDRN RIPVEMNHGA 180 KRTRPEESDQ TVKNSTVQGF SPRYCNQRRT LGRDAQNLLD YFKKMQAENP GFYYAIQLDE 240 DNRMSNVFWA DARSRNAYSH FGDAVILDTM YRVNQCKVPF APLTGVNHHG QAILFGCALL 300 LDESEATFVW LFKTFLAAMN DRAPVSLITD QDTVIQSAVS QVFPETRHCI NKWHVLRGGQ 360 DRMSHVCHMF PNFQVELYNC INLTETVEEF ESYWEMILDK YDLKKNDWLQ SIYNTRRQWA 420 PVYFRDTFFA AVSPNQEYEC SFFDGYVSQQ ITLPLFFRQY ERALENSFEK ETEADFDTIC 480 TTPPLKTPSP MEKQAATLYT KKIFLKFQEE LVETFVYTAN RIDGDGVIST FRVAKFEDDQ 540 KAYLVSLNIS ELKANCSCQM FECSGILCRH ILTVFTVTNI LTLPSHYILK RWTINAKCGA 600 ESDEHVQLHD TESMARRYNS LCREAIRCAE EGAVSQETYN AALGALKEGG KKVALAKRNV 660 SKVSPPRSQA SCVGYDDRRT STSASEMTPL LWPRQDEMTK RFNLNDTGSP AQAVADLNPQ 720 RMAPVSLHRD DGHADNMVIL PCLKSMTWVM ENKTSAPANR VAVINLKLQD YTRTPSRESE 780 VKFQLSQVTL EPMMKSMAYI SEQLSAPANR VAVINLKLQD TETTSGESEV KFQVSRDTLG 840 AMLRSMAYIR EQLSNTVESQ LEIPAKKQRK * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g073670.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010322460.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A3Q7H2V1 | 0.0 | A0A3Q7H2V1_SOLLC; Uncharacterized protein | ||||
STRING | XP_009776131.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g073670.2.1 |
Publications ? help Back to Top | |||
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