PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g072720.2.1
Common NameLOC101263122
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 358aa    MW: 39132.4 Da    PI: 7.0145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g072720.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09103127126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f++ G C+y  +C+FaHg
  Solyc06g072720.2.1 103 FKTKLCCKFRA-GVCPYVTNCNFAHG 127
                         69*********.*************8 PP
2zf-CCCH18.73.2e-06182202626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C+ f+    C+yGd+C+F H+
  Solyc06g072720.2.1 182 CKKFYTEEGCPYGDSCTFLHD 202
                         99999999************7 PP
3zf-CCCH44.33e-14236261126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  Solyc06g072720.2.1 236 WKTRICNKWETTGYCPFGSKCHFAHG 261
                         8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-8100133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-14100135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.012102128IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7103127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.85176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8178204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17231266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10232266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422235263IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9235262IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11236261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDFTGEAGFA GGNVIPDSTA GVGGYDSWGP NFSDQAVWAT EDDYKAWNSG PYCETPSNSS  60
QDGRHSQNRS GSEPPNKKSR NVQDSDARII VTSSSKAIGK MFFKTKLCCK FRAGVCPYVT  120
NCNFAHGIEE LRKPPPNWQE IVAAHENERG VMVELREEHQ IPILSSPDLR GESQRSAKGR  180
HCKKFYTEEG CPYGDSCTFL HDEQSRSRES VAISVTPTVG GFGNNATGAT QKPSNWKTRI  240
CNKWETTGYC PFGSKCHFAH GVAELNKFGG GPAETDGKDY VSVPPELKQG GVPSRATEST  300
VPSTIPALHT DVYHLGQGVQ VQRPTGIADR PGQRFFQKWK GPDKISKIYG DWIDDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.55250.0flower| fruit| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g072720.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0Lycopersicon esculentum clone 133173F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241444.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-120C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3Q7H1U20.0A0A3Q7H1U2_SOLLC; Uncharacterized protein
STRINGSolyc06g072720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-116C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]