PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068200.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 689aa    MW: 79240.7 Da    PI: 6.6797
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068200.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.96.1e-22182263289
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         fYn YAk  GF vr+s++ ++ +++e ++ ++ Cs+ g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH +
  Solyc06g068200.1.1 182 FYNCYAKAYGFGVRVSNTWYR-KSRERYRGKLSCSNAGFKKKSEAN-----RPRPETRTGCPAMIKFRLTENKRWRIIEVELEHNHLI 263
                         9***************99997.66679**************99888.....***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-19182263IPR004330FAR1 DNA binding domain
PfamPF105512.2E-23388473IPR018289MULE transposase domain
PROSITE profilePS509668.085596637IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MAAIYSSFLQ PYGFLIHQAN IEVESLTSVS RISYIVKYNS KSCKGELPSE NILISWIERH  60
ITILCSNYIP NSTKPVIRST VGGEIHLEFF SLLTSLSKID VFALCFTFFF FSQLDVDASA  120
TLQMDGLSLN ASIFEDETEE FDIDGECAMT EYAGHSGVLE GENPVHPNIG MEFETYEDVY  180
YFYNCYAKAY GFGVRVSNTW YRKSRERYRG KLSCSNAGFK KKSEANRPRP ETRTGCPAMI  240
KFRLTENKRW RIIEVELEHN HLIHPSTEKF YKSHRNNSSG RKRPLQMTGN QENHKIRLFR  300
TVIIDPDDDG EFRNMIDQSN NHLILKPGDA QAILSFFTDL QLVNPDFFYV MDLNEKGCPR  360
NVFWAEARCK ATYGYFGDVV KIATACLISK YEVPLVVFAG VNHHGQSVPL GCGLVAGETV  420
ESFIWLLRAW LTYMIGRPPQ TVIIDQSSAM QTAIADVLPR ASHCISLSHI MKKVLEELAW  480
EDMMLYHGIR DHKWLQTLHE NRKHWVPVYL KDTFLAGMFG VTLEEREVSS PFDEYLSDHT  540
PLKEFLDGYN QCLKEIYQRE ALADSESRNP SCMLKSRIYF EMQLSKIYTN PIFVKFQIEI  600
EGMFSCLTVA DVLCECGLFN LKGFLCRHTS CVLSQNGFKE IPPQYILSRW RMDIHRSYVL  660
DYGCNFINTK NPVHRYDNLY KCAVKLVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068200.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439116.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A314LFP00.0A0A314LFP0_NICAT; Protein far1-related sequence 6
STRINGSolyc06g068200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-150FAR1-related sequence 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]