PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g066370.2.1
Common NameSlWRKY33A
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 536aa    MW: 59624.9 Da    PI: 7.3534
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g066370.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33205262260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Solyc06g066370.2.1 205 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 262
                         8****************************************.***************85 PP
2WRKY105.72.3e-33377435159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  Solyc06g066370.2.1 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASQDIRSVITTYEGKHNHD 435
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-29195263IPR003657WRKY domain
PROSITE profilePS5081124.088199263IPR003657WRKY domain
SuperFamilySSF1182909.68E-26200263IPR003657WRKY domain
SMARTSM007749.2E-37204262IPR003657WRKY domain
PfamPF031061.1E-25205261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37362437IPR003657WRKY domain
SuperFamilySSF1182905.89E-29369437IPR003657WRKY domain
PROSITE profilePS5081138.629372437IPR003657WRKY domain
SMARTSM007743.0E-38377436IPR003657WRKY domain
PfamPF031061.1E-25378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAASSFSFPT SSSSFMTTSF TDLLASDDYP TKGLADRIAE RTGSGVPKFK SLPPPSLPLS  60
PPPFSPSSYF AIPPGLSPTE LLDSPVLLSS SNLLPSPTTG SFPSRAFNWK SSSHQDVKQE  120
DKNYSDFSFQ PQVGTAASSI SQSQTNHVPL GQQAWNCQEP TKQNDQNANG RSEFNTVQNF  180
MQNNNDQNNS GNQYNQSIRE QKRSDDGYNW RKYGQKQVKG SENPRSYYKC TYPNCPTKKK  240
VERSLDGQIT EIVYKGNHNH PKPQSTRRSS SSTASSAFQS YNTQTNEIPD HQSYGSNGQM  300
DSVATPENSS ISFGDDDHEH TSQKSSRSRG DDLDEEEPDS KRWKRENESE GVSALGGSRT  360
VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSTGCPV RKHVERASQD  420
IRSVITTYEG KHNHDVPAAR GSGNHSINRP MAPTIRPTVT SHQSNYQVPL QSIRPQQSEM  480
GAPFTLEMLQ KPNNYGFSGY ANSGDSYENQ VQDNNVFSRT KDEPRDDLFM ESLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36188438178Probable WRKY transcription factor 4
2lex_A3e-36188438178Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.26670.0callus| flower| fruit| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Function -- GeneRIF ? help Back to Top
  1. Results demonstrate that SlDRW1 is a positive regulator of defense response in tomato against B. cinerea and oxidative stress. [SlDRW1]
    [PMID: 25219316]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g066370.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306910.10.0WRKY transcription factor 31
SwissprotQ6IEQ71e-140WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A3Q7HSP90.0A0A3Q7HSP9_SOLLC; Uncharacterized protein
STRINGSolyc06g066370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  4. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  5. Liu B, et al.
    Tomato WRKY transcriptional factor SlDRW1 is required for disease resistance against Botrytis cinerea and tolerance to oxidative stress.
    Plant Sci., 2014. 227: p. 145-56
    [PMID:25219316]
  6. Zhou J, et al.
    Characterization of the promoter and extended C-terminal domain of Arabidopsis WRKY33 and functional analysis of tomato WRKY33 homologues in plant stress responses.
    J. Exp. Bot., 2015. 66(15): p. 4567-83
    [PMID:25969555]
  7. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]