PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g062520.1.1 | ||||||||
Common Name | LOC101260544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 193aa MW: 20973.9 Da PI: 8.275 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7.2e-39 | 18 | 77 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG lrn+PvGg++rkn k+s Solyc06g062520.1.1 18 QQVLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGILRNIPVGGSSRKNTKRS 77 6889****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 9 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-33 | 19 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.621 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MQDPSSIYSQ INPQFPDQQV LKCPRCDSIN TKFCYYNNYN LSQPRHFCKN CKRYWTKGGI 60 LRNIPVGGSS RKNTKRSSSN SCKRSSTMTI SSSTSSEQNS KTEHFDTPVV RNSPIVDANG 120 PFGSLLASNG PEIGNFLNVL NPNGPDSGSD AAAAQSGNSN NNHEFLGEDS NCWNGTNGWA 180 DLAIYTPGST FQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11840 | 0.0 | flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g062520.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219224 | 0.0 | Solanum lycopersicum chromosome 6 clone C06SLm0074G21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241941.1 | 1e-141 | dof zinc finger protein DOF3.1 | ||||
Swissprot | O82155 | 1e-40 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A3Q7GVI9 | 1e-139 | A0A3Q7GVI9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g062520.1.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 6e-34 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g062520.1.1 |
Entrez Gene | 101260544 |
Publications ? help Back to Top | |||
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