PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g054040.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 85aa MW: 9685.05 Da PI: 8.9965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g054040.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.9	1.6e-13	33	77	1	45
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 kfY +YA++ GFsvrk++ ++s+++++i+ ++fvCskeg+r ++ Solyc06g054040.1.1 33 KFYLDYAHRNGFSVRKNRISRSRKDKSIIGQEFVCSKEGFRLKKC 77 6***************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-11	33	77	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MNAVVSFVPQ LGEQELREPS IGMEFQSLDT GFKFYLDYAH RNGFSVRKNR ISRSRKDKSI 60 IGQEFVCSKE GFRLKKCNQA CNCD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g054040.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243710	1e-139	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-32c10 map 1, complete sequence
GenBank	L41253	1e-139	Lycopersicon esculentum Hsc70 (Hsc70) gene, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068484.1	4e-46	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025884696.1	1e-47	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_025884722.1	6e-47	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025884850.1	4e-46	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025888960.1	5e-45	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7IST4	2e-51	A0A3Q7IST4_SOLLC; Uncharacterized protein
TrEMBL	V9GZJ3	1e-54	V9GZJ3_SOLLC; Uncharacterized protein
STRING	Solyc06g054040.1.1	2e-56	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-15	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g054040.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]