PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g034140.1.1

Common Name

LOC101248980

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 446aa MW: 49929.2 Da PI: 6.0454

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g034140.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.4e-15	84	174	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ++ps+v+ +l +pk+f++ h ++k + ++l de+ ++ k+ ++k++ l++GW++F a++L egD++vF+l++ s+f Solyc06g034140.1.1 84 FVKYMLPSHVSGGFWLGFPKRFCDCH-LPK-HDAIVVLVDENDEESPTKYLIDKNG----LSGGWRGFSIAHNLLEGDVLVFQLIQPSKF- 167 8999*****************655.554.4568***********889998....***********************99999. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ Solyc06g034140.1.1 168 -KVYIVRE 174 .8888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.63E-24	79	175	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.7E-20	80	176	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.62E-25	82	173	No hit	No description
PROSITE profile	PS50863	11.194	84	175	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-13	84	174	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-22	84	175	IPR003340	B3 DNA binding domain
Pfam	PF05266	2.9E-7	323	431	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAISSLYSSK KSPALSSSKK KAQQIKKKTL APTKTNKVVN GGTKKVQICL EKKTLKHSSV 60 DVNSSAMLRA AEVQANLPCQ FPSFVKYMLP SHVSGGFWLG FPKRFCDCHL PKHDAIVVLV 120 DENDEESPTK YLIDKNGLSG GWRGFSIAHN LLEGDVLVFQ LIQPSKFKVY IVRENCLTEI 180 DGAITLLNLD FRARPIKSDH DEEIKIFEAK EEKYLEPPVL DINQDDKIEE PMLLPNSDHD 240 PIADQCGNDS DNGSDVLEGI RFSESRVEFK DVKDYSGFNI IVDGLTIDSE VPALHIRTKY 300 YDLCRAQNSF LHDHLLAGLN VKLAAGMITE TVNIADAIRA CESWTPREYL DTWDNTLKGF 360 ECLGMNVGFL RARISKLDSL SSESKDVLES KKVELAEAKE EMRIIEEKVL KVKQVMKNVE 420 SEIEALTKKD ANFELKFKAL AASPW*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAISSLYSSK KSPALSSSKK KAQQIKKKTL APTKTNKVVN GGTKKVQICL EKKTLKHSSV  60
DVNSSAMLRA AEVQANLPCQ FPSFVKYMLP SHVSGGFWLG FPKRFCDCHL PKHDAIVVLV  120
DENDEESPTK YLIDKNGLSG GWRGFSIAHN LLEGDVLVFQ LIQPSKFKVY IVRENCLTEI  180
DGAITLLNLD FRARPIKSDH DEEIKIFEAK EEKYLEPPVL DINQDDKIEE PMLLPNSDHD  240
PIADQCGNDS DNGSDVLEGI RFSESRVEFK DVKDYSGFNI IVDGLTIDSE VPALHIRTKY  300
YDLCRAQNSF LHDHLLAGLN VKLAAGMITE TVNIADAIRA CESWTPREYL DTWDNTLKGF  360
ECLGMNVGFL RARISKLDSL SSESKDVLES KKVELAEAKE EMRIIEEKVL KVKQVMKNVE  420
SEIEALTKKD ANFELKFKAL AASPW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g034140.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246157	1e-141	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-13j9 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240808.1	0.0	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A3Q7GU18	0.0	A0A3Q7GU18_SOLLC; Uncharacterized protein
STRING	Solyc06g034140.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43
Representative plant	OGRP7667	8	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-42	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g034140.1.1
Entrez Gene	101248980

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]