PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g009430.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 25987.3 Da PI: 7.711 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.1 | 1.6e-11 | 14 | 57 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +Ed +l++ + +G g+W++ a+ g++R++k+c++rw++yl Solyc06g009430.1.1 14 SSDEDSKLIHSISIFGQGRWNSLAHVAGLKRSGKSCRLRWLNYL 57 789***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.516 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-16 | 8 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.47E-16 | 14 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-10 | 14 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.66E-8 | 14 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-5 | 57 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MKQVLTEMKK GPCSSDEDSK LIHSISIFGQ GRWNSLAHVA GLKRSGKSCR LRWLNYLRPN 60 LRRGKITPQE KLLILLLHFR FGNRTKVQKH AKELHCEINS QQFRHLLLYQ WIPSLLAQQI 120 STSSSSSSSS ELIVKENYSL NDINTYPNVN IISSTDSLVR EDSNIWNNLS SFEDRINVPH 180 DISTPSDMTL HYYSSHDEDD QYYFHNYWTS AEMSSLYEMD LWL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g009430.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078167.1 | 1e-130 | transcription factor MYB78-like | ||||
TrEMBL | A0A1U8FGX4 | 1e-82 | A0A1U8FGX4_CAPAN; transcription factor MYB108 | ||||
STRING | Solyc06g009430.1.1 | 1e-164 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15393 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-39 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g009430.1.1 |
Publications ? help Back to Top | |||
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