PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g007530.2.1

Common Name

LOC101249925

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 294aa MW: 33722.4 Da PI: 9.7201

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g007530.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.6e-17	141	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v + +l lp +f+++h + ++++++ l de+g ++e + +k+ + l++GW+ F+ +++L++gD +vF+l++ ++f Solyc06g007530.2.1 141 FIKTMVRSHVYSCFWLGLPTRFCQDHL-P-KSTVDVLLVDEEGLEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEPTKF- 224 89*******************9995.3.3789************..555544..*********************9876666. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ Solyc06g007530.2.1 225 -KVYIVRA 231 .8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.6E-22	133	234	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-24	135	237	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.42E-24	139	230	No hit	No description
SMART	SM01019	7.4E-23	141	232	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.239	141	232	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-15	141	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MANDKTNSYE ELRRQRVLDN KKRFEDLGIL NISKNLSDIT KSEKKSDYKT ELRRVRQKAK 60 DVYLSEPRRS ARARNPVPTY RDEIDIELPS LRKRSKFSSS WASYLARPLE EVKVASYEEK 120 VLALKCAEKL QSNLQSDKPF FIKTMVRSHV YSCFWLGLPT RFCQDHLPKS TVDVLLVDEE 180 GLEYEALFIG KRTGLSGGWR AFALDHKLDD GDALVFELVE PTKFKVYIVR ASQCSSEVDK 240 SEAEKEESEA EETPKSETKK KKKSSNKPEV PTIAKEEVSV VVTSATRRST RRK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g007530.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013957	0.0	Lycopersicon esculentum clone 132981R, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240433.1	0.0	putative B3 domain-containing protein At5g58280
Refseq	XP_019069951.1	0.0	putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	4e-71	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	K4C3D4	0.0	K4C3D4_SOLLC; Uncharacterized protein
STRING	Solyc06g007530.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12510	20	22
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-72	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g007530.2.1
Entrez Gene	101249925

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]