PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g005590.2.1
Common NameLOC101255102
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 690aa    MW: 76209.6 Da    PI: 8.6064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g005590.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07591639247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Solyc06g005590.2.1 591 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 639
                         56777799*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.06E-10390482IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.903.9E-4394466No hitNo description
PROSITE profilePS500539.635396466IPR000626Ubiquitin domain
PROSITE profilePS5129413.527585644IPR017930Myb domain
SMARTSM007173.5E-6589642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-10590640IPR009057Homeodomain-like
SuperFamilySSF466893.79E-15591672IPR009057Homeodomain-like
CDDcd116601.23E-16591641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MELHKRLDYG FIGYQVPHIP RATRSARGRG NIRKKSDSND MCAFDLLTTV AGKLLLEGES  60
TSNSSGKDQS AVVKDTIETV KEDEDTPLKE NPCNERCQEG GFFISQIVSE APVVNHCLSK  120
STDTLSGPAS VITSSDCSEK LGSAEQFING ERKTENRNCL EHELSGCRDF SSCTLGAESK  180
KQVKLNLSND ATITTNKRTA ICSSEFPDPW DRKHSMLVAS DNTVKLSLST DPDPFGSFPV  240
IRDDVQLANK DDDEKSWGCT QPSTRNKAFR PAPRVGDWRM RKLQASKYWE VNPQSDDEGH  300
VNVDNKTRHV YQKRENVYMS ERSQRDFPFK KRKLYYCNSF SNSDGGSSDG ICSSPTKDLN  360
RDASGYSLAS SGARAAAGTS IPKGASASFR SNDSHVKLKI KSFRVPELFV EIPENATVGS  420
LKRTVMEAVT AILGGGLRIG VVFQGKKVRD DSKTLSQAGI SHDDKLDGLG FTLEPSPSRA  480
SPPLGPEGCS RVLPCETPQP LTRCSPGSTI IHNGMQRGTY NAFPDHSGTT LSNFIESDHD  540
SAPSPPDASL EKNAADSRAL VPVAAMDAEA LAVVPMRKPK RCETVQRRIR RPFSVFEVEA  600
LVQAVEKLGT GRWRDVKMRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL  660
DRVLIAHAYW SQQQARQQMK HQSETRLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-535776804107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323332QRDFPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g005590.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321730.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGSolyc06g005590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-152TRF-like 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]