PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050860.1.1
Common NameLOC101264934
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 482aa    MW: 53805.5 Da    PI: 6.8442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050860.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001887104219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk Fs++ ++  H
  Solyc05g050860.1.1  87 VCENCGKEFSSWKSFLEH 104
                         6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.11739IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.61739IPR007087Zinc finger, C2H2
PfamPF139120.0051739IPR007087Zinc finger, C2H2
SuperFamilySSF576671.72E-51739No hitNo description
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576671.72E-581105No hitNo description
SMARTSM0035518086106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.7E-7227250No hitNo description
SMARTSM003550.13228250IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-9228252IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-7291318No hitNo description
SMARTSM003550.52296318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328296318IPR007087Zinc finger, C2H2
PfamPF139126.3E-13296319IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MACIDQEQQQ QQPIYKHYCR VCKKGFVCGR ALGGHMRAHG IGDEGANIDD DDPASDWEDK  60
FGGGVKGGNK RLYQLRTNPN RQKSNRVCEN CGKEFSSWKS FLEHGKCSSE DAESLVSSPC  120
LEGEDYINNG GRKGYGWSKR KRSLRTKIGT INSTTSTYPS SEDEDLVLAK CLIDLANAKV  180
DLSLVEPEES CASASKEEER ARNPMNYLTP LVRPFDNKAK GISNKGLFEC KACKKVFNSH  240
QALGGHRASH KKVKGCYAAK QDQLDDSLID DNDMNITQDD QFTLQGSKSM RKSKIHECSI  300
CHRVFSTGQA LGGHKRCHWI TSNSPDSTSK FNFNGHMDQI NLRSNLRKSS DTLDLNIPIS  360
HDDMSRIRRD PMNPLSFEVS TEIHLHPWSS NPNEAKEHSC SENYYLDETI NNNNNNNNNN  420
NNNENNNIIN GTIQNVEDDE ADSKLKLAKL SELKDMNKNS ENPSHWLQVG IGPTTQVGAD  480
P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050860.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240265.10.0zinc finger protein ZAT4-like
TrEMBLA0A3Q7GIG40.0A0A3Q7GIG4_SOLLC; Uncharacterized protein
STRINGSolyc05g050860.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-28C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]