PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050560.1.1
Common NameLOC101247327
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 580aa    MW: 64271 Da    PI: 7.7845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11432478455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I ++q
  Solyc05g050560.1.1 432 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITDMQ 478
                         799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5345233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.056428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-16429489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-13431482No hitNo description
PfamPF000104.3E-9432478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14432488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MTMLWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNMLS DLVERPNASN  60
FSWNYAIFWQ ISRSKLGELV LGWGDGCCRE AREGEESELT RILNIRLADE AQQRMRKRVL  120
QKLHMFFGGT DEDNYVSGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFTA GKHVWLSDVM  180
RSSVDYCSRS FLMKSAGMQT VVLIPTDIGV MELGSVRTIP ESLELVHSIK SCFSSFLAQV  240
RAKQAAPLAA VVAEKKNGNN SVFPSSFPFD QSKENPKIFG QNLESGSTEF REKLALRKPV  300
DGPLEMYRNG NRAPIINTQN GVRPVSWASF GNVKPGNSVD LYSPQAPPNN LREFVNGGRE  360
ELRLNSLQHQ KPGGMQIDFT NSRPVVSPVP TVESEHSDVE VSCKEKHAGP ADERRPRKRG  420
RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA IAHITDMQKR  480
IRDAEYKLEK RGSTSVDAAD INIEAASDEV IVRARCPLGT HPVAKVVEAF KETQVSVVES  540
KLAVGNDTVY HTFVVKSSGP EQLTKEKLMA AFAGESNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26426485261Transcription factor MYC2
5gnj_B2e-26426485261Transcription factor MYC2
5gnj_E2e-26426485261Transcription factor MYC2
5gnj_F2e-26426485261Transcription factor MYC2
5gnj_G2e-26426485261Transcription factor MYC2
5gnj_I2e-26426485261Transcription factor MYC2
5gnj_M2e-26426485261Transcription factor MYC2
5gnj_N2e-26426485261Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413421RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.90860.0flower| fruit
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43801000.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050560.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321507.10.0transcription factor bHLH13-like
SwissprotA0A3Q7HES40.0MTB2_SOLLC; Transcription factor MTB2
TrEMBLA0A0V0IRQ00.0A0A0V0IRQ0_SOLCH; Putative transcription factor bHLH13-like
STRINGSolyc05g050560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]