PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g045880.1.1
Common NameLOC104647604
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 322aa    MW: 36329 Da    PI: 8.7435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g045880.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-27168226259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+++WrKYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ +  +geHnh+
  Solyc05g045880.1.1 168 NDKWAWRKYGQKYIKGSPFPRNYYKCSTSkHCEAKKQIEKSSKDEDIFLVSCSGEHNHD 226
                         8*************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26158228IPR003657WRKY domain
PROSITE profilePS5081129.241162228IPR003657WRKY domain
SuperFamilySSF1182903.92E-23163228IPR003657WRKY domain
SMARTSM007743.0E-26167227IPR003657WRKY domain
PfamPF031061.1E-21168226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGDDNRDIGV VARSCNINKP NNVVYPKLGL NVSHVWNYFD KTLAPRMNSF TGSSEIVSLD  60
FPIIRQERSY DQVIISNQNN NQELYLHSIT PIQFIQQITV PQSRTIVECV PPTTTQAEWI  120
DKQKQLDIGA NSHPNFSFSM TTTLTQSQTR KNHSIMLTYE SSQQELTNDK WAWRKYGQKY  180
IKGSPFPRNY YKCSTSKHCE AKKQIEKSSK DEDIFLVSCS GEHNHDPPKS RRYLASCNNN  240
SKLNLPKGIN ISPKESIFNA SSSLSKRVKH STDVASPIIG TKPPLEIGSK NKMVVAVVHN  300
IGDGEEKVDM NEDIFMGIDQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-171652281274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g045880.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321551.10.0probable WRKY transcription factor 27
TrEMBLK4C0S10.0K4C0S1_SOLLC; Uncharacterized protein
STRINGSolyc05g045880.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-28WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]