PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g017740.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20314.2 Da PI: 6.5131 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.9 | 1.4e-11 | 12 | 99 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k+ ++ + ++ + lp f+++++++ sk l++ e g sWe k+ rkk++ ++ +k W +Fv ++++ +D+++F+l+++s+ l+ Solyc05g017740.1.1 12 CKIILSRETVMNK-MQLPSCFVKDNKKI--LSKNCLLKTsEAGMSWEAKI-ARKKPNYFICEKDWPQFVLHHQVEPRDILIFSLIEKST--LH 98 5555444444444.99*******99866..666777777699********.6999999*************************997444..35 PP E CS B3 94 v 94 v Solyc05g017740.1.1 99 V 99 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.26E-15 | 5 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-15 | 5 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.46E-8 | 9 | 100 | No hit | No description |
PROSITE profile | PS50863 | 9.812 | 10 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-9 | 11 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.8E-5 | 11 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MLMDTDQPPS FCKIILSRET VMNKMQLPSC FVKDNKKILS KNCLLKTSEA GMSWEAKIAR 60 KKPNYFICEK DWPQFVLHHQ VEPRDILIFS LIEKSTLHVR PYTPKNCRNI TRKRQLSYEE 120 LSSSSSSEEE IGPSKRVKKM EPIIVVSDTE EEYVDMSFSD DDEDDPPYSH RATY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g017740.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075920.2 | 1e-112 | uncharacterized protein LOC107020115 | ||||
TrEMBL | K4BZ34 | 1e-125 | K4BZ34_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g017740.1.1 | 1e-126 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4888 | 13 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 5e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g017740.1.1 |
Publications ? help Back to Top | |||
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