PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc05g012500.2.1 | ||||||||
Common Name | LOC101247821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 328aa MW: 35425.6 Da PI: 5.1173 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.5 | 2.3e-32 | 178 | 235 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ed ++v++tYeg+H h+ Solyc05g012500.2.1 178 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDSSIVITTYEGQHCHH 235 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-33 | 162 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-28 | 169 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.344 | 172 | 237 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-38 | 177 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 178 | 235 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MDENDKQVDN DPLPGGGGGG AAEFTGATTE SSWSLGGGDD ESDNVYFFGT SSTDRESSIL 60 TEFGWNFQPH GNRDVRAGGD GSRFDRIDED LAGNSTTTTA SVSASVSITE PTVTEKITDE 120 PVSSSCSDDP PEKSTASGSS SASRPPSDTA SKVKKKGQKR IRQPRFAFMT KSEVDHLEDG 180 YRWRKYGQKA VKNSPFPRSY YRCTNTKCTV KKRVERSSED SSIVITTYEG QHCHHTVGFP 240 RGGLINHEAF TSQLTPLPSQ FYHPSGVQYP HELVPMSSPA APESHTMPGE TGPEPIRLPE 300 TSQPDATQQP TDEGLLGDIV PPGMRSR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-24 | 167 | 234 | 7 | 74 | Probable WRKY transcription factor 4 |
2ayd_A | 4e-24 | 165 | 234 | 2 | 71 | WRKY transcription factor 1 |
2lex_A | 5e-24 | 167 | 234 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.5444 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc05g012500.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013933 | 0.0 | Lycopersicon esculentum clone 132931F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239067.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Refseq | XP_010320877.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Refseq | XP_025886861.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 6e-70 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A3Q7GFS3 | 0.0 | A0A3Q7GFS3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g012500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8031 | 22 | 28 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-64 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc05g012500.2.1 |
Entrez Gene | 101247821 |
Publications ? help Back to Top | |||
---|---|---|---|
|