PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g008050.1.1 | ||||||||
Common Name | LOC101252281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 23986 Da PI: 6.5212 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.5e-19 | 83 | 137 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k Solyc05g008050.1.1 83 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSK 137 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.2 | 7.1e-36 | 83 | 171 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+ lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+ Solyc05g008050.1.1 83 RKKLRLTKQQSFLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNQRLKKEVEELRA 171 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 61 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-18 | 69 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-16 | 81 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.48E-14 | 82 | 140 | No hit | No description |
Pfam | PF00046 | 2.0E-16 | 83 | 137 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.6E-10 | 139 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.0E-20 | 139 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEIMPENSTC LELTMSIPGS SSNSSSFPSS GEGGGGRYNM MRELDINQIP SNINEEEISM 60 EEEEEEESSN NNNNNDNING APRKKLRLTK QQSFLLEESF RQNHTLNPKQ KEALAMQLKL 120 KARQVEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLSEQNQ RLKKEVEELR AMKVGPPTVL 180 SPHSCHPLPA STLTMCPHCE RVTRTNVRD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARSKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g008050.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238741 | 1e-129 | Solanum lycopersicum chromosome 05 clone C05HBa0078I05, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238836.1 | 1e-153 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 2e-76 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 2e-76 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A3Q7GDV0 | 1e-120 | A0A3Q7GDV0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g008050.1.1 | 1e-152 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 1e-60 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g008050.1.1 |
Entrez Gene | 101252281 |
Publications ? help Back to Top | |||
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