PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g079600.2.1
Common NameLOC101264517
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 309aa    MW: 34626.9 Da    PI: 7.8119
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g079600.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.7e-32125178255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Solyc04g079600.2.1 125 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 178
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.74E-15122179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28123179IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24125178IPR006447Myb domain, plants
PfamPF002494.9E-7126177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTKDTLLSTV PDLSLQISLP SCILRSDQFK EAVRFDFRTD SGSSASGGSD LSHENTVFLH  60
PEIKKAFNLP LIPTFEPTLS LGFAQVPLGT HFQYHHEHYQ PQIYGREFKR SSRLISGVKR  120
SVRAPRMRWT STLHAHFVHA VQLLGGHERA TPKSVLELMN VKDLTLAHVK SHLQMYRTVK  180
STDKSTAKGQ GEINIFLNQN NGINNGEYEK SCEEIDALSQ PSTISQNMAH MRDPSSFMPD  240
QTNVWSHSNR ERTFANYPHI YTNMDGIETA NNSSSNDTML DLEFTLGRPS WKMGQAGSSS  300
NDLTLLKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17126180458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}.
UniprotTISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g079600.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145240.0S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886642.10.0probable transcription factor KAN4
SwissprotQ9FJV53e-66KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A3Q7G7080.0A0A3Q7G708_SOLLC; Uncharacterized protein
STRINGSolyc04g079600.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122621822
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-66G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  3. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  4. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]