PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g078650.2.1 | ||||||||
Common Name | LOC100301933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WOX | ||||||||
Protein Properties | Length: 243aa MW: 27686.1 Da PI: 8.7775 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.8e-21 | 97 | 156 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Solyc04g078650.2.1 97 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 156 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 118.3 | 3.5e-38 | 97 | 158 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Solyc04g078650.2.1 97 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 158 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-13 | 92 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.284 | 92 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-7 | 94 | 161 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.58E-5 | 97 | 158 | No hit | No description |
Pfam | PF00046 | 3.6E-19 | 97 | 156 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-8 | 98 | 156 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000017 | anatomy | vascular leaf primordium | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020100 | anatomy | hypocotyl |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MYMGSSSGSL SMKVHQFTRG FLEHEAASPS LTLGCKRLRP LAPKLNTTNN DTTTTIVTPP 60 FDLKSFIRPE SSNSPPKLAY NEDKKDSSQV ESHPGGTRWN PTQEQIGILE MLYRGGMRTP 120 NAQQIEQITA QLGKYGKIEG KNVFYWFQNH KARERQKQKR NSLGLSQSPR TPSAIVTSPL 180 SFDTRGEVVR DEDSPYKRKC RGWTFEYMEE EQQQQDEEEI INCRENGDRT LQLFPLHPEG 240 MR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6328 | 0.0 | cell culture| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g078650.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ440849 | 0.0 | Solanum lycopersicum WOX4 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234251.1 | 0.0 | WOX4 | ||||
Swissprot | Q6X7J9 | 3e-75 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | B7U6X3 | 0.0 | B7U6X3_SOLLC; WOX4 | ||||
STRING | Solyc04g078650.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 | Representative plant | OGRP7167 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 7e-74 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g078650.2.1 |
Entrez Gene | 100301933 |