PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g077480.2.1
Common NameLOC101251469
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 383aa    MW: 41736.5 Da    PI: 6.7913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g077480.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10225273355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Solyc04g077480.2.1 225 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 273
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-11220277No hitNo description
SuperFamilySSF474595.1E-17220290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472222272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16222290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7225273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGTKENGSFN CPSTGMNRAD SMPNVDPFSG SGWDPLLSLN QKGGFKGSSV VGHNEFVNLP  60
YQSSQFVHYP SDSNLAEMVP KIPAFGNESY SELVNTFPLQ EQLRGANCYA NYVKNRGIST  120
EGECQISGEG AVEVSPNGKR KISENHSLSN ANKNVEGELQ KAPSRDSSDC SKEQDGGKRH  180
KTDQNVSSNL RNKQAGKQVK DDSDGGEPPK DNYVHVRAKR GQATNSHSLA ERVRRERISE  240
RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NFDIDRILSK  300
EMLHQQTSNA ALLGLGPGLS SSLPFPGISH GSFAGIPATT PPFHPLPQNV WDNELQSLLQ  360
MGFDSTSSMN NMGPNGRSKL DL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g077480.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157220.0S.lycopersicum DNA sequence from clone LE_HBa-128L9 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238065.10.0transcription factor bHLH74
RefseqXP_010320291.10.0transcription factor bHLH74
RefseqXP_010320292.10.0transcription factor bHLH74
RefseqXP_019069218.10.0transcription factor bHLH74
TrEMBLA0A3Q7G6150.0A0A3Q7G615_SOLLC; Uncharacterized protein
STRINGSolyc04g077480.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-64bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]