PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g070960.1.1 | ||||||||
Common Name | LOC101248873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 268aa MW: 30425.2 Da PI: 4.5712 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.4e-38 | 21 | 80 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+ Solyc04g070960.1.1 21 EQAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80 67789***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-28 | 8 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-32 | 22 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.686 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MLPYHPRPMI MMERTRKSNI EQAPNCPRCA STNTKFCYYN NYSLSQPRYF CKACRRYWTK 60 GGSLRNVPVG GGCRKSRRSR STRKDDNTLQ TSSPALEGAP GAHDIDLADV FAKYLNQGTN 120 NDHDDNIIIQ ESQDYSSIGA SLSNSPSSDS LVNNPTSFEN ESLLDNFQDY PCGNFLQEEQ 180 GAQINQDFLD FNASFLEMQA ILGQEEDQFD HYNTSNFEWQ PMMQFQDFGS ILELDDHQLT 240 KNSTTNLASH DNNNNNNYSS FDLSNYI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g070960.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC245817 | 2e-30 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238480.1 | 0.0 | dof zinc finger protein DOF2.5 | ||||
Swissprot | Q9SVC5 | 3e-42 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | M0ZJJ7 | 0.0 | M0ZJJ7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g070960.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-37 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g070960.1.1 |
Entrez Gene | 101248873 |
Publications ? help Back to Top | |||
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