PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g050090.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 79aa    MW: 9193.68 Da    PI: 9.9305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g050090.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09836129
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                        + rW  eEdell ++v+++G ++W++I +
  Solyc04g050090.1.1  8 KRRWNREEDELLQKLVEEHGVKNWSLIGQ 36
                        579***********************975 PP
2Myb_DNA-binding30.87e-104077948
                        HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        d+ +++a++++G++  + Ia  +  gRt+k +k++w+++l
  Solyc04g050090.1.1 40 DDTIIKAHAKFGNE-LSMIACLLS-GRTDKAIKNHWNSFL 77
                        7899**********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.427178IPR017930Myb domain
SuperFamilySSF466893.75E-16573IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-8636IPR009057Homeodomain-like
SMARTSM007171.6E-4778IPR001005SANT/Myb domain
PfamPF002498.1E-7836IPR001005SANT/Myb domain
CDDcd001674.67E-81077No hitNo description
Gene3DG3DSA:1.10.10.605.4E-124077IPR009057Homeodomain-like
PfamPF002497.5E-74076IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MKKISMIKRR WNREEDELLQ KLVEEHGVKN WSLIGQWIQD DTIIKAHAKF GNELSMIACL  60
LSGRTDKAIK NHWNSFLT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g050090.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159289.11e-26PREDICTED: transcription factor MYB44-like
SwissprotO231603e-21MYB73_ARATH; Transcription factor MYB73
TrEMBLK4BRY21e-49K4BRY2_SOLLC; Uncharacterized protein
STRINGSolyc04g050090.1.12e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2761122
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-23myb domain protein 73
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]