PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g011670.2.1 | ||||||||
Common Name | LOC101255681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 375aa MW: 42395.2 Da PI: 6.5152 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.9 | 3.4e-11 | 88 | 123 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k+ rr+++NReAAr+sR+RKka++++Le+ +L + Solyc04g011670.2.1 88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 123 788*************************86555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.9E-5 | 84 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.691 | 86 | 128 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.85E-6 | 88 | 123 | No hit | No description |
Pfam | PF00170 | 9.7E-8 | 88 | 118 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 91 | 106 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-7 | 91 | 116 | No hit | No description |
Pfam | PF14144 | 1.5E-30 | 175 | 250 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MNSSTYTQFV ASRRMGICEP IHQIGMWDDF NASCPSTSTT MILEVEKCLE DQIPMMDKRL 60 DIETEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LIQLEQELDR ARKQGLYVGA GLDASQLSYS GTASSGTAVF DTEYGQWVEE QNRQTNDLRN 180 ALHHSQISEA ELRIIVDGCL NHYYELFRVK ATAAKADVLY IMSGMWKTSA ERFFMWIGGF 240 RPSELLKVLT PHLELLTEQQ LREVCNLRQS CQQAEDALSQ GMVKLHQILA EAVAAGQLGE 300 GNYSLPQMGP AIEKLEALVR FVNQADHLRQ ETLQQMSRIL NTLQAAQGLL ALGEYFERLR 360 VLSSHWATRL HEPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.12920 | 0.0 | cell culture| fruit| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00642 | SELEX | Transfer from LOC107771743 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g011670.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236730.1 | 0.0 | TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1 | ||||
Swissprot | P14232 | 0.0 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | A0A3Q7FZL2 | 0.0 | A0A3Q7FZL2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g011670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA780 | 24 | 97 | Representative plant | OGRP2679 | 11 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-159 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g011670.2.1 |
Entrez Gene | 101255681 |