PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g011650.2.1 | ||||||||
Common Name | LOC101255981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 668aa MW: 74953.5 Da PI: 9.8362 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.8e-07 | 544 | 593 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Solyc04g011650.2.1 544 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 593 6789999*******************9988889999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 5.31E-8 | 350 | 435 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.613 | 354 | 424 | IPR000626 | Ubiquitin domain |
Gene3D | G3DSA:3.10.20.90 | 6.2E-4 | 357 | 424 | No hit | No description |
PROSITE profile | PS51294 | 16.891 | 539 | 598 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-7 | 543 | 596 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 544 | 594 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.32E-15 | 545 | 626 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.44E-14 | 545 | 595 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MSSKKRVRHG FSGFEFPVIP KAPRSVRRRH SHKNINNDQI CAFELLATVA GELLQESESS 60 ACSSAVIGKD KLSDCREVVK REQLKEDKAV KSECFDQGSC VESAYLPEPA VQEPNLKYSL 120 DKPNRIENNI FRTEVEGASS NLEDVYDKRT DTGTQKQLTD DGKQTEDLTL ANSSSVKGPI 180 EKRVNNNSAI NSDSSVQLPW YRAVPRPSFG KQRNNVKLGI RDDDENSFGS YRHNTNIRAF 240 RQTSRNGYKS MRKMLTSRRW KVAPQLKDWE RSCSKYGMKS FHRNRKRVCA LERCRFEIPS 300 KRRKLCHYSL AVAYDQQANS KSISNSPEKG IKRDITGVGA SASVRNHRKK DSNVKFSIKS 360 FKVPELFIEV PENETVGSLK RTVMDAVKSI LGSGLRVGMV VQGKKVRDDN KTLQQAGISQ 420 NGNLDTLGFT LEPSSYPVSP SLHSKDLPAL SPYVADHELT RRPPSPIMEL ELPSFSSALS 480 ETRLDEHDKD YHELALSPTN PIDPPSDVAI SDSRALVVPN AEAHPVVPVN PKNRCSEHSQ 540 RRTRRPFSVA EVEALVEAVE QLGTGRWRDV KIRAFEYADH RTYVDVKDKW KTLVHTASIA 600 PQQRRGEPVP QELLDRVLVA HDYWSKQHGK NQAEPAKMTE AQLLHVGTLE NSNNSNSMPS 660 KMVGSAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-58 | 528 | 648 | 1 | 121 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 303 | RKRVCALERCRFEIPSKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.7424 | 0.0 | floral bud| flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g011650.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236731.1 | 0.0 | telomere repeat-binding protein 3 | ||||
TrEMBL | M1A7D5 | 0.0 | M1A7D5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g011650.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2093 | 17 | 29 | Representative plant | OGRP1391 | 12 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-101 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g011650.2.1 |
Entrez Gene | 101255981 |
Publications ? help Back to Top | |||
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