PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g008480.1.1

Common Name

LOC101255580

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 298aa MW: 34040.1 Da PI: 8.0571

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g008480.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.2e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l++m+v gLt+++vkSHLQ+YR+ Solyc04g008480.1.1 19 PRLRWTPDLHHCFVHAIEKLGGQDKATPKLVLQMMDVRGLTISNVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.682	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-31	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-15	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDKATPKLVL QMMDVRGLTI 60 SNVKSHLQMY RSMKSDVNKQ GERMTIQPSK EVCLGDLDCH YQQQEQEDEG CVEQQKLLVY 120 QYPLSFSSNP NMKRTDSTPY FNSVQPTKRA RIERCSIREA VSNEYNSRND YNTEKNETTQ 180 PLCNSTTHIF NPLTTSNELQ ESLFFKVLKT QDSNRDSLKR FKFEDSMKID NVREDDDERG 240 LSLSLSLHRP TTQRSNASSI ISEISETISS YSGGLNLNIW QSSSEKQNVN LNLSIAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Function -- GeneRIF ? help Back to Top
CLAU modulates leaf morphogenesis by curbing the leaf's morphogenetic potential. [clausa] [PMID: 26189897] Study show that CLAU attenuates cytokinin signaling, and that clau plants have increased cytokinin sensitivity. The results suggest that flexible leaf patterning involves a coordinated interplay between transcription factors and hormones. [PMID: 27385816]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g008480.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240197	4e-10	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236899.2	0.0	putative Myb family transcription factor At1g14600
TrEMBL	A0A3Q7GPB2	0.0	A0A3Q7GPB2_SOLLC; Uncharacterized protein
STRING	Solyc04g008480.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc04g008480.1.1
Entrez Gene	101255580

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Bar M, et al. CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling. Plant Cell, 2016. 28(7): p. 1602-15 [PMID:27385816]