PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g118770.2.1 | ||||||||
Common Name | LOC101252569 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WOX | ||||||||
Protein Properties | Length: 394aa MW: 44057.7 Da PI: 7.1324 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.6 | 3.8e-22 | 76 | 135 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Solyc03g118770.2.1 76 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 135 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.4 | 2.7e-37 | 75 | 137 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Solyc03g118770.2.1 75 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 137 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.5E-5 | 73 | 140 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-12 | 76 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-9 | 76 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.8E-20 | 76 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.31E-6 | 77 | 137 | No hit | No description |
PROSITE profile | PS50071 | 11.256 | 81 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MWMMGYNEGG DFNMSDSCNG RKLRPLMPRV PHAPTANPTN CLRNFHGENF IALNHHQLAM 60 SEQNKRDFNT QLVVSSRWNP TPEQLQTLEE LYRRGTRTPS AEQIQHITAQ LRRYGKIEGK 120 NVFYWFQNHK ARERQKRRRQ LESSANGNGN GGGGDDQSQS NCNAENAERK ESGANRTVFE 180 IEQTKHWPSP TNCSTLAEKT AAKTKAGAAS AAAGATAAGV AESCRVAAAE RWIPFDEGEQ 240 RRSLLAERNA TWQMMHLSCS PPTINNNTNC ATICSNTITT ATCTPIIRSC PSTPTTIDHQ 300 TKQLFKPKDH LNIFITPFRC DQKHQNIIGD EEEEGEGNGH EAQTLELFPL RSSNDNNDEN 360 NFSDKDEIGA AANLNNNFNG SHYQFFEFLP LKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g118770.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB287296 | 1e-10 | Solanum lycopersicum Tm-1^GCR237 mRNA for Tm-1 protein, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885968.1 | 0.0 | WUSCHEL-related homeobox 1 isoform X1 | ||||
Refseq | XP_025885969.1 | 0.0 | WUSCHEL-related homeobox 1 isoform X1 | ||||
TrEMBL | M1A495 | 0.0 | M1A495_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g118770.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 | Representative plant | OGRP8416 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 4e-52 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g118770.2.1 |
Entrez Gene | 101252569 |
Publications ? help Back to Top | |||
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