PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g117520.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 619aa    MW: 72390.1 Da    PI: 8.9309
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g117520.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.39.2e-221194189
                FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                        ++Yn Y++evGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leHnH+l
  Solyc03g117520.1.1 11 NYYNCYSREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHSL 94
                        69*****************************************9988.....99*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-191194IPR004330FAR1 DNA binding domain
PfamPF105512.6E-25213306IPR018289MULE transposase domain
PROSITE profilePS509669.99500536IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6511538IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MEFESYDDAY NYYNCYSREV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNRLR  60
KETRTGCPAM MRMRMVDSKR WRVLEVTLEH NHSLGTKAYK TIMKTGTGNK KKLDSNCNAE  120
VQTIKLYRAL VIDAGATRNA NFSARRCQTS SDCHDKLNLR KGDTQAMYNY FCRMQLTNPN  180
FFYLMDLNDE GQLRNVFWID ARSRAAYAYF VDVIYIDNSY LSNKYEIPLV AFVGTNHHGQ  240
SMLLGCGLLA GETKASYVWM FKAWLTCSLG RFPQTIITER CKVLETAIHE VFPRSLHRFA  300
LSHILRKVPE KLGGLRNYDV IRKALFKTIY EGLKPFDFEA AWRVMIQRSG VGDHEWLCSL  360
YNDRAKWAPV YLKDTFFAGM ATARSNETLT AFFDKYVHKQ TPLKEFLDKY ELALQKKFKE  420
EALADMESRS SNPELKTRCS FELQLSKVYT REIFKRFQLE VEEMYSCFST TKLHVDGQVV  480
IFLVKERVLE EGNRREIRDY EVLYNREAAE VRCICSCFNF YGYLCRHALC VLNFNGVEEI  540
PSKYILSRWK KDYKRLCALD VESSFTESTE QVQWYSQLYI SALQVVEEGV ISLDHYKVAL  600
NAFEESLSRV HHIEEKTK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g117520.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358060.0Solanum lycopersicum chromosome 3 clone C03SLe0090P17, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885943.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_025885944.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A3Q7GI490.0A0A3Q7GI49_SOLLC; Uncharacterized protein
STRINGSolyc03g117520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]