PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g114230.1.1
Common NameLOC101248286
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 181aa    MW: 20791.2 Da    PI: 9.3578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g114230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.65.9e-051262654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksL 54
                        +  E++RR +++   ++L +l+P+  +++s K  ++  +   +A+ YI +L
  Solyc03g114230.1.1 12 KTQEKNRRIQMKYLSSKLFSLIPPHHHQYSAKdmVTQQDQIDQAITYIEKL 62
                        578*********************76788888789*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-7866IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-61166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MENTSPEKLD RKTQEKNRRI QMKYLSSKLF SLIPPHHHQY SAKDMVTQQD QIDQAITYIE  60
KLKERVDVLM RRKDKIIAQG TSDDSKKFMP STSCSNIKLP MIEVRELGST IEVILVSCLQ  120
KKFTMQEVII ILEEEGVQVV TANFSTIGDK VYYTIHAQVK ITRLGVDASR VYLRLQNLIC  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g114230.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461097e-54Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-18l22 map 1, complete sequence
GenBankAC2462137e-54Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-58d12 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318915.11e-131transcription factor bHLH162-like isoform X1
TrEMBLA0A3Q7FR921e-129A0A3Q7FR92_SOLLC; Uncharacterized protein
STRINGSolyc03g114230.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-28bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]