PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g111500.2.1
Common NameLOC101262505
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 502aa    MW: 55914.9 Da    PI: 7.9448
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g111500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.1e-1926116199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+   d + ++ l +p kfa++  +   ++++  led+sg +W+v++  ++++g+  +++GW +F +++gL++gDf+vF+++  + f 
  Solyc03g111500.2.1  26 FFKVM--IDKSFLQVLFFPPKFARSVPHL--TDQETYLEDSSGHRWRVTV--CNHKGSLSIRQGWPKFSSDHGLDVGDFLVFHYVPGQHF- 109
                         89999..78888888*********99655..4568***************..*******************************9855666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           vk+f +
  Solyc03g111500.2.1 110 -IVKIFGT 116
                         .9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2222119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.05624117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-2025119IPR015300DNA-binding pseudobarrel domain
CDDcd100179.63E-2025114No hitNo description
PfamPF023625.2E-1726115IPR003340B3 DNA binding domain
SMARTSM010194.0E-1326117IPR003340B3 DNA binding domain
SMARTSM010190.17411499IPR003340B3 DNA binding domain
CDDcd100171.53E-7415497No hitNo description
Gene3DG3DSA:2.40.330.101.3E-8419492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-9420491IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-7421492IPR003340B3 DNA binding domain
PROSITE profilePS508638.332442501IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MECENEACGG CKKDCMLIHG KGVLSFFKVM IDKSFLQVLF FPPKFARSVP HLTDQETYLE  60
DSSGHRWRVT VCNHKGSLSI RQGWPKFSSD HGLDVGDFLV FHYVPGQHFI VKIFGTSGCE  120
KKSCSDIGNG RKRARTYLEA TAQAELFQTT DINSVKKKSK TSAESESETV THKTNTANFK  180
TSAESESEKV RYKANAANFK TSAESESEKV TYKPSTANFT TNINADIGKG QSVHSAIDVD  240
ESCCVIDRNA QYDQEDDRLC LHLSSFEMPA SKPLTVGTSS PFKGDIGKDN QVEANFRSQT  300
ESNLNVEIDN LNSKAPWSKL EAGIRATNMV SSPAKDIPLR YPKYKKSNEA SQFAREAMLV  360
KKEFEEITTE AFSPARAIHG GEYANGNEKV IKSEPADSGD ARSLNAGSYS CLVEIDGRDF  420
LELPESWRKY LPQKAKLGRM IIYLRGQDKR IWPTLYNSRS GFNVLTCGWK QVTATYGLNP  480
GDECLFQLVN QRGCIFDIRK I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.234320.0flower| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g111500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319046.10.0B3 domain-containing protein Os01g0905400-like
RefseqXP_010319047.10.0B3 domain-containing protein Os01g0905400-like
TrEMBLA0A3Q7FQZ10.0A0A3Q7FQZ1_SOLLC; Uncharacterized protein
STRINGSolyc03g111500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-13B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]