PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g083110.1.1
Common NameLOC104646413
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family RAV
Protein Properties Length: 336aa    MW: 38721.5 Da    PI: 6.6024
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g083110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.7e-104795155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s++kGV    ++g W A+I+       + +r++lg+f t+ +Aa a++ a+ +l g
  Solyc03g083110.1.1 47 SKFKGVV-GQNNGHWGAQIYA------NhQRIWLGTFKTETDAAMAYDSAAIRLLG 95
                        799***6.6679******999......44**********99************987 PP
2B393.31.7e-29171254185
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+ltpsdv+k++rlv+pkk+a+++  +    ++ +++++d+s r W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l 
  Solyc03g083110.1.1 171 FQKELTPSDVGKLNRLVIPKKYATKYfpQ---IQDEEMIFYDTSRRLWKFRYCYWKSSQSFVFTKGWNKFVKDKGLRAKDTIVFNLC 254
                         99************************633...35668***********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-134798IPR016177DNA-binding domain
PfamPF008471.6E-44795IPR001471AP2/ERF domain
CDDcd000182.54E-1947106No hitNo description
SMARTSM003809.2E-1548110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-154897IPR001471AP2/ERF domain
PROSITE profilePS5103215.63348104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-32168253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-28169256IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-29170253No hitNo description
SMARTSM010195.4E-22171275IPR003340B3 DNA binding domain
PROSITE profilePS5086314.395171275IPR003340B3 DNA binding domain
PfamPF023621.1E-26171254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEDETNLISS TTNVTVGDCD SSGSNHLLPK KRNINNAREG KCCISGSKFK GVVGQNNGHW  60
GAQIYANHQR IWLGTFKTET DAAMAYDSAA IRLLGPDHSH RNLSWTNSTI QEPNFQTQFS  120
TEDILRMIKE GSYTSRFDEY LKDKFEDHFQ SLKNLQKVNE GNAEFSYKQL FQKELTPSDV  180
GKLNRLVIPK KYATKYFPQI QDEEMIFYDT SRRLWKFRYC YWKSSQSFVF TKGWNKFVKD  240
KGLRAKDTIV FNLCEFKNGT KENCNAFVID VVKSIDGVPM NLALNHHEQE ETIDDHEVDT  300
QEFTKAQPFD DDLVPVWLFG KQIGWMETKG AMEFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-2717025213101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g083110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318116.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6888e-84RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLK4BI870.0K4BI87_SOLLC; Uncharacterized protein
STRINGSolyc03g083110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-86RAV family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]