PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g062820.1.1
Common NameLOC101243969
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16350.8 Da    PI: 9.2307
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g062820.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.8e-171259249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +i  ks r vtfskRrng++KK eEL  L++ +v+ +++s+ g++y+y
  Solyc03g062820.1.1 12 KITKKSCRMVTFSKRRNGLFKKNEELESLTGSQVSSVVLSPAGRIYTY 59
                        68999******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-16362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.717363IPR002100Transcription factor, MADS-box
CDDcd001206.11E-18460No hitNo description
SuperFamilySSF554553.01E-17465IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-14525IPR002100Transcription factor, MADS-box
PfamPF003193.8E-191259IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGTGKKKIEM EKITKKSCRM VTFSKRRNGL FKKNEELESL TGSQVSSVVL SPAGRIYTYG  60
DVNTAINMHF SKIDCMRQSD SDVVVSSGSS ELRSSSKSLR DWLEDIDVEQ CQNLNQLLLL  120
KEQLEGTKKK IVSIEDSKSF QALFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g062820.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234880.11e-102agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7FKZ61e-100A0A3Q7FKZ6_SOLLC; Uncharacterized protein
STRINGSolyc03g062820.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-12M-type_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]