PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g044110.1.1
Common NameLOC101266308
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 324aa    MW: 36879.7 Da    PI: 4.6584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g044110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67e-16271101099
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++++l++p  fa++h ++  ++  + le ++g+ Wev++  ++++g+++l+kGW+eF++   ++++ +++F+++ r  f  vv ++++
  Solyc03g044110.1.1  27 LDELHCLRIPVVFAQRHCENMLNP--VFLEAPHGKPWEVEV--ENSQGQIWLAKGWSEFCDYYSIRVKSILIFTYNPRCHF--VVAIYDQ 110
                         445677***********4444444..***************..*******************************9987888..9998876 PP
2B347.53.2e-152353051387
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           r+ +p +fa++ ++++ +   ++l +e+g +W+vk+  + ++++++++kGW  F k+n++  g+++ F+l++ 
  Solyc03g044110.1.1 235 ATRMAIPLRFAQQTDIINMK--NMRLVNEEGVEWKVKI--EYTRSTVIIKKGWTAFRKDNKIANGETCRFRLIRG 305
                         34699******999888554..7***************..778888*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-1912111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1913110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.30718111IPR003340B3 DNA binding domain
CDDcd100179.20E-1518109No hitNo description
SMARTSM010193.7E-820111IPR003340B3 DNA binding domain
PfamPF023621.5E-1228110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17221311IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-18221311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337223317IPR003340B3 DNA binding domain
CDDcd100171.04E-12224306No hitNo description
SMARTSM010192.5E-8226319IPR003340B3 DNA binding domain
PfamPF023621.6E-12235304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MANEFHGSSL RSSSPNNPKF IQIITSLDEL HCLRIPVVFA QRHCENMLNP VFLEAPHGKP  60
WEVEVENSQG QIWLAKGWSE FCDYYSIRVK SILIFTYNPR CHFVVAIYDQ SKTEIEYPID  120
QDIESDEQEE DVLVAQANAN VIDEDILILQ SNANVIEEDI PILQSNANVI EDEEEDIPVN  180
SPQTNANVID QHKEVGEANS ISEKVGPNNY SSRYSLVDLT GDNPFFEMVI KKSHATRMAI  240
PLRFAQQTDI INMKNMRLVN EEGVEWKVKI EYTRSTVIIK KGWTAFRKDN KIANGETCRF  300
RLIRGPIANV LQVQKISTPL CLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g044110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468440.0Solanum lycopersicum strain Heinz 1706 chromosome 3 clone sle-43k16 map 3, complete sequence
GenBankAC2471610.0Solanum lycopersicum strain Heinz 1706 chromosome 3 clone sle-22o24 map 3, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234716.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7FGM00.0A0A3Q7FGM0_SOLLC; Uncharacterized protein
STRINGSolyc03g044110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-15B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]