PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g043900.1.1 | ||||||||
Common Name | LOC101263881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 204aa MW: 23654.6 Da PI: 9.7924 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.8 | 2.3e-13 | 86 | 144 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+++NRe+ArrsR RK+ +e+L++ + L+ eN++L ++++ ++ ++++ k ++ Solyc03g043900.1.1 86 RKRKRMISNRESARRSRMRKQTHLENLRNQSNRLKLENRDLTNRIQLITGHYQQIKRNN 144 5789***************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-10 | 77 | 141 | No hit | No description |
SMART | SM00338 | 2.8E-12 | 82 | 146 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.496 | 84 | 147 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.24E-11 | 86 | 138 | No hit | No description |
Pfam | PF00170 | 4.6E-11 | 86 | 144 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.01E-18 | 87 | 138 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 89 | 104 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLSTILSSDG IFPNTFPSFY DDFTQWDCTE PTSTFPKQGV ELVFSPTQSP TPEPVISHDS 60 GSGFDKSKPD SPNDSPNSGT HDLAERKRKR MISNRESARR SRMRKQTHLE NLRNQSNRLK 120 LENRDLTNRI QLITGHYQQI KRNNEMLRAE SIFLQERLKG IRDLLITRQL QQQLYNSAFA 180 WPCNNLYVEQ RPHMINQPII NHQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 105 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g043900.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234711.1 | 1e-150 | bZIP transcription factor 11-like | ||||
TrEMBL | A0A3Q7FJ80 | 1e-149 | A0A3Q7FJ80_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g043900.1.1 | 1e-150 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 | Representative plant | OGRP8744 | 8 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 2e-24 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g043900.1.1 |
Entrez Gene | 101263881 |
Publications ? help Back to Top | |||
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