PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc03g043830.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 175aa MW: 20528.2 Da PI: 5.0566

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc03g043830.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	51	110	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ rr ++NR++A+rsR RK ++i+ L++++k Le+ L ++e+ k++ +kl+ e+ Solyc03g043830.1.1 51 MKKLRRTISNRLSAQRSRMRKTEYIDLLKKEAKDLEERIAFLGRKIENDKDNNKKLQLEN 110 6999***************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-5	48	119	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	50	113	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.17E-9	51	106	No hit	No description
Pfam	PF00170	1.0E-9	51	110	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-10	52	107	No hit	No description
CDD	cd14702	3.47E-7	53	97	No hit	No description
PROSITE pattern	PS00036	0	55	70	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MNEKRIKSDE PHLSLPLKTP IEYESVNRIP SLEEALNSEI KHGQVDPNMN MKKLRRTISN 60 RLSAQRSRMR KTEYIDLLKK EAKDLEERIA FLGRKIENDK DNNKKLQLEN QMLQLQLDSI 120 TNKSNLLAVQ NEELKAELKR LKEPEDEEDE EYIDIDQYLN FDNMNFSPSR NDGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc03g043830.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886059.1	1e-105	basic leucine zipper 34-like
TrEMBL	K4BG03	1e-119	K4BG03_SOLLC; Uncharacterized protein
STRING	Solyc03g043830.1.1	1e-120	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7615	19	29
Representative plant	OGRP13467	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07160.1	9e-08	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc03g043830.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]