PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g025440.2.1
Common NameLOC101256560
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 686aa    MW: 76042.4 Da    PI: 7.6876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g025440.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.7e-067697223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kC++C++ F ++ n++rH+r+H
  Solyc03g025440.2.1 76 KCEKCSREFYSPINYRRHMRLH 97
                        7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6197597IPR007087Zinc finger, C2H2
SMARTSM003550.00557597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MPVAKLSIGA TPAAMKADEG NDPLDTLIRQ AMGKEPLFSF SRTGDGPVQW IQLLNGLEQQ  60
DNAGGWPMLT PAKYQKCEKC SREFYSPINY RRHMRLHRRA LNNFDKESRK YRDLLGAFWD  120
KLSLDDIKEV VSLHDVSIKD LSGSSLVQDL ATSMRKPAVW TLPQDYYKAG LALLDLIQGI  180
PSKLTSGELF SVLDDASERT FLCAGTAESL QKYVFDGDAS KKGPELKNLV ACTSFLFEQK  240
LVKAWFADKD AEALRCQKLL FEEEEAAQKK QAELLERKKQ KKLRQKEQRE REQSNWERGD  300
LEVSIAESSI LSAAVSDSNS STPEVSDDTS SCLELVQFSN NEVMDIEAQL NLSSQHLDLV  360
EIQDVEPQPV SAQSRRHFPH TQWQVPKSQR MGRNGSHNNQ NHQVQKIEPV QKHGVFKDRG  420
APVNSSKIWT KKIRVLNGER FRPEPQKEAI NQNQSNCEVM IGSISVPMKN CSTPGLGNCP  480
AVERDNFDSH AEPAMTKKCN LAVKPAKQDA LQGGSNGAAG KLWRPVSRHG SGQHPEEAVM  540
SGKLDSQISS AENCLRSCSM DNPTGKSKNY TCQVSDVNAH QGLGFCSTSA KAFLSQRWKE  600
AIAGDHVTLV LSNDTEVSGH PDAQNSSSEA APSSDDQEHG VLVEADNQQR NTGVSNVSSH  660
GNSKLKFRQK PDKSIKTRYI PKQKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKKQKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.82630.0callus| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g025440.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234412.10.0uncharacterized protein LOC101256560
TrEMBLA0A3Q7FEM70.0A0A3Q7FEM7_SOLLC; Uncharacterized protein
STRINGSolyc03g025440.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]