PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g007640.1.1
Common NameLOC104646114
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 360aa    MW: 41141.2 Da    PI: 7.5428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g007640.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.54.2e-26198255259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dD+++W+KYGqK++kgs+fpr+Y++C+ ++C+++k +e+s +++k++ + Y++ Hnh+
  Solyc03g007640.1.1 198 DDKWAWQKYGQKSIKGSPFPRNYFKCSASNCKATKIIEKSPKNEKYFLVSYSDVHNHD 255
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-24187257IPR003657WRKY domain
PROSITE profilePS5081125.58192257IPR003657WRKY domain
SuperFamilySSF1182901.83E-22192257IPR003657WRKY domain
SMARTSM007744.7E-26197256IPR003657WRKY domain
PfamPF031062.5E-19198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEDNDWDLSA VVRSCNIIIN KPTNVTASEN DSYTFEKTLD FSVGREKKSN DQVVITNQNQ  60
EMYLHPTQPN QFSEENILPS LPTTVTTGVP TTTTTTTPQE SIYVHQQLEK SNDQVIIMNQ  120
NKNPMMYLEP QFRQQIFLPP LPTTTTPEES VNQQQLVVHD QVYPNITMPV QNSMIRTFKR  180
RDQSPRVFNE VLQEELTDDK WAWQKYGQKS IKGSPFPRNY FKCSASNCKA TKIIEKSPKN  240
EKYFLVSYSD VHNHDPPPSR RSLALYNNIS KRRLPKSINI VPKALKLNAS SSSSSSSSSS  300
KRAKRVKVDA SSTAPKPEIK KNNEMVDDVV ENKGDIIEEE EITYDKIFMD FENSNKLYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-161952581275WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g007640.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384670.0Solanum lycopersicum chromosome 3 clone C03HBa0257N18, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317518.10.0probable WRKY transcription factor 27
TrEMBLK4BEI60.0K4BEI6_SOLLC; Uncharacterized protein
STRINGSolyc03g007640.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-24WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]