PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g007140.2.1
Common NameLOC101247292
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 469aa    MW: 52263.9 Da    PI: 6.599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g007140.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.2e-2031120198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv+   d l s++l++p +fa+  ++   ++++  led+sg++W+v +  +++ g+  +++GW+ F +++gLk+gDf+vF++++ + f 
  Solyc03g007140.2.1  31 FFKVM--IDKLFSKILYFPPRFARLVSHL--TDQETYLEDSSGQQWRVGI--CNHNGSLAIRQGWRTFSSEHGLKVGDFLVFHYIQGQHF- 114
                         89999..99999***********888655..5568***************..*********************************97777. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          vv+++ 
  Solyc03g007140.2.1 115 -VVQIYG 120
                         .999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2129124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59229122IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-2229124IPR015300DNA-binding pseudobarrel domain
CDDcd100175.00E-2130119No hitNo description
SMARTSM010192.9E-1631122IPR003340B3 DNA binding domain
PfamPF023621.3E-1731119IPR003340B3 DNA binding domain
PROSITE profilePS508638.854362460IPR003340B3 DNA binding domain
SMARTSM010190.7365458IPR003340B3 DNA binding domain
CDDcd100173.15E-8371456No hitNo description
SuperFamilySSF1019367.06E-10374460IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-7375456IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVHHNEACEM CTRTCMLIHG QRDPSPIVNS FFKVMIDKLF SKILYFPPRF ARLVSHLTDQ  60
ETYLEDSSGQ QWRVGICNHN GSLAIRQGWR TFSSEHGLKV GDFLVFHYIQ GQHFVVQIYG  120
TSGCQKINSY NGTHLGKKRP RTNSTETSHD ELSPETDINL RKKWNSTPSV TAIPESERAG  180
HQPVTTTFAS NIDAETGEQQ IVPQEEGTSD VLQGENRPHN HTDIISQRES SSVDVVPLEM  240
ELLTLKAPFL DVKITQTEKI SGPVNDISLL GQTDENDHHV GLISSTSLIS AENGTSAKET  300
RVDKLELKEM EANTRCPSKN LNGKEPKITE KDGQVYPDAV IGNNMVIKSE PADSGDTSFP  360
DAGNFSCSLR VDGRNFLELP QSWPQVIVGR RKMGKIIIYL KGPDNRCWPI IYHENFGSKI  420
LAGNWALFAA VYGLKPGDEC LFQLSNQSKR MFTVHVAHKV DVTQTTLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.54060.0fruit| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g007140.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138510.0Lycopersicon esculentum clone 132811R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068313.10.0uncharacterized protein LOC101247292 isoform X1
TrEMBLA0A3Q7FDL40.0A0A3Q7FDL4_SOLLC; Uncharacterized protein
STRINGSolyc03g007140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-12B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]