PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g006350.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 696aa    MW: 77290.9 Da    PI: 6.771
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g006350.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06180199525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C ffar G+C  G++C+F H
  Solyc03g006350.2.1 180 RCEFFAR-GWCIKGNSCRFLH 199
                         5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.413175202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6175199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MHQVSCVLGL SVRITQPLFL FRLTSSWRFY GIQVLEALAL EHLLRSDFSS QQELVANLPQ  60
QTPLIEGANE SCRISDSDGT RERIDGKRTH IDSDVQASEF EDGKTNTERI QRSGQELDAE  120
TLTDVSGKVA IGIPFTDGGD QEAMDNLKQT SPRLDVLKTR QRSSSPAADS RGESKRLAMR  180
CEFFARGWCI KGNSCRFLHI KDHVTSHDKD GGLDDTMIKS KLADGKGLEE SGKRSVLDGS  240
SDSVQSAVQS GENLKLRGEE ELHMRADGPS STQDFRRESL GCKPHLAGYS TSSSPLLKDG  300
SLHKNILHDG KLSSVLLSGS YQNTVVSPYT SGLDDTNHKR NRSVFEKHGL RVFNDSVDRL  360
SHHCSSSRNV DALDDQKLLD CSQEYSSSRS TSLHHTSSAF PSSKTEFSQI DLSWDTRYSS  420
DYRTMAPFDD WEPSVPFRPS FLLSQMIGCP ESLYDPIRDS IDQSNVGDGP SKLSSSAKGG  480
TVVTKHMQAN ADPVSTGTLG PEQSSNEVPI SGNIYHRDIL PDYLSEKDMS TNETDTADTA  540
VAHQEINTSS KEDKYSRSAN LRGATKADKQ LSTELPRTRT RKKTQSESER LRHGTEIDID  600
RKTDRSVNKE SRVMKHFHAA LVEFVKELLR PTWSEGLMSK DAYKMIVKKT INKVVNSLHP  660
NQIPGTAESI RQYLDLSQQK LAKLIEAYVE KYGKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.61400.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g006350.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068302.10.0uncharacterized protein LOC101250369 isoform X1
TrEMBLA0A3Q7FFD80.0A0A3Q7FFD8_SOLLC; Uncharacterized protein
STRINGSolyc03g006350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Representative plantOGRP728179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-27C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]