PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g006150.2.1 | ||||||||
Common Name | LOC101251954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 308aa MW: 35707.1 Da PI: 9.0182 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.6 | 9.2e-31 | 60 | 113 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+a+++LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Solyc03g006150.2.1 60 PRLRWTPELHLSFVSAIDRLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 113 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.979 | 56 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 56 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-14 | 59 | 114 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-22 | 60 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-8 | 61 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MTSDSIDLNE EVGDQEGIEV VISDESHEKI IDENNNNNST SCGDYENNKR VRQYVRSKLP 60 RLRWTPELHL SFVSAIDRLG GQERATPKLV LQMMNVRGLS IAHVKSHLQM YRSKKLGEFG 120 QVLGHAYRTN NQGRSYLYGK LSQRLFNPLQ DFKMKNGAIV LARNFNDDDN HFQNSFAKTP 180 YETKEKFPRY LENHEICPVR QRHFHEEKRW PPCEFNQNKL NSQSLFHQNG PKWNCTYNSL 240 GPKFKTPFRF EMKQDKMFIK EKDYLLPDLQ LGLSTTNQDN NNSKEKNSSD INTMLSLSLP 300 SYSSSAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 61 | 115 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g006150.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234092.1 | 0.0 | uncharacterized protein LOC101251954 | ||||
TrEMBL | K4BE38 | 0.0 | K4BE38_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g006150.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5516 | 23 | 34 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 2e-36 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g006150.2.1 |
Entrez Gene | 101251954 |
Publications ? help Back to Top | |||
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