PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g006000.2.1
Common NameLOC101247401
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 402aa    MW: 46080.3 Da    PI: 5.2204
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g006000.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.4e-34141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+ye+++d++++ ++sws n++sf+v ++ +fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+ +
  Solyc03g006000.2.1  14 FIAKIYEMVDDPSTDPIVSWSLNNKSFIVRNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANEDFLRGQPH 95 
                         9********************999****************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Solyc03g006000.2.1  96 LLKNIYRRKP 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-37998IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSLNNKSF IVRNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI YRRKPVHSHS VQNIHSLSSS  120
ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL  180
STLARTINKP GLALSLMPQL EMNERKRRLP GNSFLYNEIG LEDNQASSSE NTTRENMDHT  240
SLSTLNKEVL DQLESSLTFW EYTLRDIDQT RMRRSSSIDL DESISCADSP AISYPQLTVD  300
VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASHNVPTGV NDVFWEQFLT ENPGSTDVKP  360
EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-241110326129Heat shock factor protein 1
5d5v_B7e-241110326129Heat shock factor protein 1
5d5v_D7e-241110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.58150.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g006000.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146190.0Lycopersicon esculentum clone 134122F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317423.10.0heat stress transcription factor A-4a
RefseqXP_010317424.10.0heat stress transcription factor A-4a
TrEMBLA0A3Q7FD010.0A0A3Q7FD01_SOLLC; Uncharacterized protein
STRINGSolyc03g006000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-108heat shock transcription factor A4A
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]