PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g005350.2.1
Common NameLOC101258920
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 297aa    MW: 32417.6 Da    PI: 4.8971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g005350.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08145189554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el P++      K + a++L +  +Y+k L
  Solyc03g005350.2.1 145 HSIAERLRRERISERIKALQELAPSC-----NKTDRAAMLDEILDYVKFL 189
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-14138199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-10138194No hitNo description
PROSITE profilePS5088815.535140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADNPPEVYA ADDFLEQILA IPSYASLPVT DLTAGASSEN STSGVSQLQQ QPLFPLGLSL  60
DNGFADANNT GGFQVKTERE AMNMGNLYPG LEHLQSHAVC LSVPQVHQVQ PFQGHPTSSA  120
IVTIPHQPAI RPRVRARRGQ ATDPHSIAER LRRERISERI KALQELAPSC NKTDRAAMLD  180
EILDYVKFLR LQVKVLSMSR LGGTSAAAQV VADIPLQSVE GDTCESHSNQ RVWEKWSDSE  240
TEQEVAKLME EDVGTAMQYL QSKSLCIMPI SLAALIYPTQ QSDNQSMVKP EQAAPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.46260.0callus| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g005350.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132310.0Lycopersicon esculentum clone 134477R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234028.10.0transcription factor UNE12
RefseqXP_010317400.10.0transcription factor UNE12
SwissprotO227685e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3Q7FCN70.0A0A3Q7FCN7_SOLLC; Uncharacterized protein
STRINGSolyc03g005350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-70bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]