PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g094290.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 114aa MW: 13079.1 Da PI: 11.1393 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.7 | 1.7e-37 | 31 | 99 | 2 | 70 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq+a+p+i+++tg ++++a Solyc02g094290.1.1 31 APKRKSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQKAEPSIIAATGHGTIQA 99 789*************************************************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-30 | 36 | 100 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.985 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MKRQNTNNTM EMKDFQIGIA EKDEAKKHQL APKRKSNKDR HTKVEGRGRR IRMPALCAAR 60 IFQLTRELGH KSDGETIQWL LQKAEPSIIA ATGHGTIQAS LYRRLDPLFR NRE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24646 | 1e-178 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g094290.1.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215457 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885512.1 | 3e-67 | LOW QUALITY PROTEIN: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 6e-45 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A3Q7FEE8 | 1e-78 | A0A3Q7FEE8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g094290.1.1 | 2e-79 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-47 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g094290.1.1 |