PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g094170.2.1 | ||||||||
Common Name | LOC101268333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 28802.5 Da PI: 9.0085 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 96 | 118 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Solyc02g094170.2.1 96 SCSVCSRVYPTSRLLSIHVSEaH 118 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.57 | 68 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 95 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.45 | 133 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 135 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAMEFDRQIE LGFPFWSPTR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EENQLVQNSI 60 TDDEISNLFC PIIGCGAQMK NLDDFEDHYV TRHTASCSVC SRVYPTSRLL SIHVSEAHDS 120 FFQAKAARGF PMYECLVEGC DIKLKSYKSR QQHLVDKHKF PASYEFFRKA RPSKKQRLKP 180 HHKQASNKTQ EKSSAMQVEE ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAVN 240 RQRGPVTSTG GTKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.2052 | 0.0 | cell culture| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g094170.2.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215418 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0204A09, complete sequence | |||
GenBank | AC215457 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231779.1 | 0.0 | zinc finger protein 511 | ||||
TrEMBL | A0A3Q7FEC8 | 0.0 | A0A3Q7FEC8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g094170.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10211 | 20 | 22 | Representative plant | OGRP7538 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-106 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g094170.2.1 |
Entrez Gene | 101268333 |
Publications ? help Back to Top | |||
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