PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g092090.1.1 | ||||||||
Common Name | LOC104645678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 215aa MW: 24816.6 Da PI: 10.5749 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.3 | 5.2e-11 | 114 | 169 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++ rr+ +NRe+ArrsR RK++ +e+L++ + L+ N++ ++l ++ +++ ++ Solyc02g092090.1.1 114 RKRRRMVSNRESARRSRMRKQKHLENLRNQANRLKVGNREIMNRLRLITHQCQVVQ 169 6789999******************************************9999666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-11 | 110 | 174 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.036 | 112 | 175 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.84E-10 | 114 | 165 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-7 | 114 | 166 | No hit | No description |
Pfam | PF00170 | 7.8E-8 | 114 | 167 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.21E-15 | 115 | 166 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 117 | 132 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLSTFPATTL SADGLFSNLF PAFDGGFTPW ECIEPAFLFS QQVESVVSPK ESPPPEPVIS 60 NSDSGSDDSK PNSVHSSSGS DDPNRNNNNN NKSNRCPDER KRQRTTSNRD MDERKRRRMV 120 SNRESARRSR MRKQKHLENL RNQANRLKVG NREIMNRLRL ITHQCQVVQC ENERLRTESA 180 ILRQRLEGIR QIWINRQFNS YSAWACNNME QRPH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 117 | RKRQRTTSNRDMDERKRRR |
2 | 113 | 117 | RKRRR |
3 | 113 | 134 | RKRRRMVSNRESARRSRMRKQK |
4 | 126 | 133 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8430 | 0.0 | callus| fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g092090.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010316032.1 | 1e-157 | bZIP transcription factor 2 | ||||
TrEMBL | M1BXK2 | 1e-117 | M1BXK2_SOLTU; Uncharacterized protein | ||||
STRING | Solyc02g092090.1.1 | 1e-156 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 | Representative plant | OGRP8744 | 8 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 2e-28 | basic leucine-zipper 7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g092090.1.1 |
Entrez Gene | 104645678 |
Publications ? help Back to Top | |||
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