PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g090410.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 316aa    MW: 35131.5 Da    PI: 7.0166
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g090410.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.73.5e-42111101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrrkC+++Cv+apyfp +qp kf nvhk+FGasnv+kll++l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++
  Solyc02g090410.2.1  11 PCAACKFLRRKCTQECVFAPYFPPDQPLKFSNVHKVFGASNVSKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQKLRQVQ 101
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +l  +++e
  Solyc02g090410.2.1 102 DDLLNARKE 110
                         *99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.38910111IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4111107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKKRMSSTNS PCAACKFLRR KCTQECVFAP YFPPDQPLKF SNVHKVFGAS NVSKLLNELN  60
AAQREDAVNS LAYEAEYRLR DPVYGCVGLI SLLQQKLRQV QDDLLNARKE LSTYIGPAGM  120
LPIANLQPPG FFQPQQQPMN APSSSTMSPF NMNPMSGMST GVPHGGPLLI RDPQQQQQQQ  180
LLQQPIQVQQ FITAIAAKEQ RDQQEMLKYY EQQEQQEDAV RFNSGFDSTG SVTATGFHQM  240
SSSIPPSLVL AGTYENPYNL VPPHQQSQPE QSLSYQQQVH LQSQQQLQPP QPPETPRQQP  300
RANSEEEGRG SGPSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-4871247125LOB family transfactor Ramosa2.1
5ly0_B8e-4871247125LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}.
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g090410.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265170.0Solanum lycopersicum chromosome 2 clone C02SLe0056J19, complete sequence
GenBankAC2327710.0Solanum lycopersicum chromosome 2 clone C02HBa0115F06, complete sequence
GenBankAC2327740.0Solanum lycopersicum chromosome 2 clone C02SLe0056J10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232054.10.0LOB domain-containing protein 36-like
RefseqXP_010316156.10.0LOB domain-containing protein 36-like
SwissprotQ9FKZ36e-77LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A3Q7FBR00.0A0A3Q7FBR0_SOLLC; Uncharacterized protein
STRINGSolyc02g090410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-74ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  3. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]