PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc02g090310.1.1 | ||||||||
Common Name | LOC101253547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 261aa MW: 28593.9 Da PI: 8.625 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 3.9e-39 | 46 | 104 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Solyc02g090310.1.1 46 SENLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSI 104 57899***************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.6E-33 | 48 | 103 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 49 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.394 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MIQELFAGNT TLIGDDNISN ITPSSSPISC TTSNSNIAPA SANANSENLR CPRCDSPNTK 60 FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKSIATSKST AAKFKNSLPF 120 EFIGKSGIFG GFEQEIIPSN YDNNNPFLFS SPHQNHNPIL SLLKGNLHKS IGVNQFPSNN 180 GIWKNNYEEN VGEVQNSRGF QELYQRLKAS TNRCYTDNMH GPSSSSMILD SAPVTGGELG 240 CWNPTLSTWL DLPTANGAYL * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.14024 | 0.0 | flower| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc02g090310.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC226517 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0056J19, complete sequence | |||
GenBank | AC232774 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0056J10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232062.1 | 0.0 | dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A3Q7FC59 | 0.0 | A0A3Q7FC59_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g090310.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-34 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc02g090310.1.1 |
Entrez Gene | 101253547 |
Publications ? help Back to Top | |||
---|---|---|---|
|