PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g090170.2.1
Common NameLOC101257140
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 367aa    MW: 43045.3 Da    PI: 9.0556
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g090170.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1626117199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk++   + +++ rl++p kf++ ++++++   + +l+ +sg++W v++   ++ + yv+ +GW+ Fvk++ L+  D++vFk+dg s f 
  Solyc02g090170.2.1  26 FFKIM--INDFRR-RLRIPQKFVTCFKNSHKLLGQKILTGPSGNTWLVEV--IRTEKDYVFCNGWEVFVKDHSLEIADMLVFKMDGFSAF- 110
                         67777..555555.6*******96665555555677889***********..999999*************************9887888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v++f++
  Solyc02g090170.2.1 111 -DVMIFDA 117
                         .8888886 PP
2B348.31.8e-15264341787
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         ++ +   g+l lpk+ a++++ k   s t+tl+ +s+ r+W+  +  r + ++ v+++GW +F+ +n+L+e D++vF+l + 
  Solyc02g090170.2.1 264 QPTHVYMGQLKLPKEWAQKNMRK--ISETITLRIPSSrRTWSASI--RCRMEGLVIQSGWDDFAMDNDLEEFDICVFELAQG 341
                         455555678***********866..67799999966559******..889999*************************8743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-2122123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-2022120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.81623118IPR003340B3 DNA binding domain
PfamPF023622.6E-1426117IPR003340B3 DNA binding domain
CDDcd100173.02E-1726116No hitNo description
SMARTSM010197.1E-1226118IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-19253342IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-19254342IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-14257357No hitNo description
PROSITE profilePS5086311.688258359IPR003340B3 DNA binding domain
SMARTSM010196.1E-9259359IPR003340B3 DNA binding domain
PfamPF023623.6E-13263341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MATICERCKV LEKQKYWEEF DKQHKFFKIM INDFRRRLRI PQKFVTCFKN SHKLLGQKIL  60
TGPSGNTWLV EVIRTEKDYV FCNGWEVFVK DHSLEIADML VFKMDGFSAF DVMIFDASAC  120
EKETTFFVKK NRNPCKHPDE VTDEHTTEQQ SSEDEPSNDD DVTDEDDNIQ EPTRGRKSSR  180
GKQYQFQSLQ SSKGKKMKKI LVAKQDNRRR KCTPMSSRKK NVEPEEKRPM YSNRRRVSEK  240
EKMRVHQLAS RHTSSVPSLL MTMQPTHVYM GQLKLPKEWA QKNMRKISET ITLRIPSSRR  300
TWSASIRCRM EGLVIQSGWD DFAMDNDLEE FDICVFELAQ GGKHDSKPVI LDVYIYPVEN  360
EIMRPL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g090170.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154280.0Solanum lycopersicum chromosome 2 clone C02HBa0226F10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233644.10.0B3 domain-containing protein REM16-like
TrEMBLA0A3Q7FC330.0A0A3Q7FC33_SOLLC; Uncharacterized protein
STRINGSolyc02g090170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-38B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]