PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g084230.1.1
Common NameBBR/BPC2
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 289aa    MW: 31971.9 Da    PI: 8.6866
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g084230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind294.15.5e-90128829301
           GAGA_bind  29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqls 115
                         m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + er+++++al l++ s++      +++g ++ sg+k+i + qq+ 
  Solyc02g084230.1.1   1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMY 91 
                         899****************************************************999888777664434456677777777776666533 PP

           GAGA_bind 116 e.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............. 186
                         +         +ed+a++  +   +++ +i ++++  ke++++k+ + +++ k ++ +             +++   ++             
  Solyc02g084230.1.1  92 RttadaahGSTEDPAAGYLKDTDTSEAKIPKKVKRPKESRHNKQAKIPRVGKISTDS------------LSMQVIATTsddwvnlqemdsd 170
                         333444434455555555555555555555555555555555555555555554444............3333332212333334444444 PP

           GAGA_bind 187 .....skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                              + +++k+ +l+l ++++D+s++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++L
  Solyc02g084230.1.1 171 kegdtQLTSWKD-NLGL-KINFDDSAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRL 259
                         455544445543.5666.467********************************************************************** PP

           GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         aa+Gydls p+DLkdhWAkHGtn++ t++
  Solyc02g084230.1.1 260 AAQGYDLSIPLDLKDHWAKHGTNRYSTLK 288
                         *************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.9E-791288IPR010409GAGA-binding transcriptional activator
SMARTSM012263.8E-901288IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNALIQERN DAIAALRLQD  60
SSTNDNNMVP DSPGNGTESG AKHIYNQQQM YRTTADAAHG STEDPAAGYL KDTDTSEAKI  120
PKKVKRPKES RHNKQAKIPR VGKISTDSLS MQVIATTSDD WVNLQEMDSD KEGDTQLTSW  180
KDNLGLKINF DDSAMPVPVC SCTGTPQPCY KWGHGGWQSA CCTTTISMYP LPQISNKRYS  240
RVGGRKMSGG AFSKLLNRLA AQGYDLSIPL DLKDHWAKHG TNRYSTLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.121680.0floral bud| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g084230.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265030.0Solanum lycopersicum chromosome 2 clone C02HBa0044J01, complete sequence
GenBankFJ9823040.0Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds
GenBankFJ9823050.0Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC2) gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266243.10.0GAGA-binding transcriptional activator
TrEMBLH1ZN870.0H1ZN87_SOLLC; GAGA-binding transcriptional activator
STRINGSolyc02g084230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80622230
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.23e-78basic pentacysteine 6