PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g083950.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WOX | ||||||||
Protein Properties | Length: 273aa MW: 31031.2 Da PI: 6.842 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.8e-20 | 25 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t++q+++L++l+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++ Solyc02g083950.2.1 25 SRWTPTSDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 85 8*****************8678*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.9 | 7.9e-37 | 23 | 87 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Solyc02g083950.2.1 23 SSSRWTPTSDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 87 789***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-11 | 17 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.592 | 20 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-6 | 22 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-17 | 25 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-8 | 25 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.69E-7 | 26 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MEHQHNIEDG GKNSNNSFLC RQSSSRWTPT SDQIRILKDL YYNNGVRSPT AEQIQRISAK 60 LRQYGKIEGK NVFYWFQNHK ARERQKKRLI AAASATDNNN ISSMQMIPHL WRSPDDHHKY 120 NTTTTNPGVQ CPSPSSHGVL PVVQTGNYGY GTLAMEKSFR ECSISPPGGS YHQNLTWVGV 180 DPYNNMSTTS PATYPFLEKS NNKHYEETLD EEQEEENYQR GNSALETLSL FPMHEENIIS 240 NFCIKHHESS GGWYHSDNNN LAALELTLNS FP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central zone of the active shoot meristem. {ECO:0000269|PubMed:12874128}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g083950.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538329 | 0.0 | Lycopersicon esculentum mRNA for wuschel protein (wus gene) |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234015.2 | 0.0 | protein WUSCHEL | ||||
Swissprot | Q84VT7 | 0.0 | WUS_SOLLC; Protein WUSCHEL | ||||
TrEMBL | A0A3Q7F7V4 | 0.0 | A0A3Q7F7V4_SOLLC; Uncharacterized protein | ||||
TrEMBL | F6LIE3 | 0.0 | F6LIE3_SOLLC; Wuschel | ||||
STRING | Solyc02g083950.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7604 | 23 | 31 | Representative plant | OGRP9087 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 4e-39 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g083950.2.1 |
Publications ? help Back to Top | |||
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