PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g082380.1.1 | ||||||||
Common Name | LOC104645780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25013.6 Da PI: 10.2078 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 58 | 102 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ l++ + +++G g+Wk+I+r+ +t+ q+ s+ qky Solyc02g082380.1.1 58 PWTEGEHSLFLMGLNKFGRGDWKSISRHYVVSKTPTQVASHAQKY 102 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.446 | 51 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.43E-15 | 53 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-7 | 55 | 105 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-16 | 56 | 105 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 8.34E-9 | 58 | 103 | No hit | No description |
Pfam | PF00249 | 7.2E-10 | 58 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 58 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEEMKNLYIN LFKEAEMENP SINTNVVDNS SDKEANPNDT PPPPVQITHS RPHRRGIPWT 60 EGEHSLFLMG LNKFGRGDWK SISRHYVVSK TPTQVASHAQ KYFCRRNSKT PVDRRRPSIN 120 DIQTVTVNST RTTTTTASNN NDQVGSLSRP FRYANYTFGG PTFANNSNGN FGIYHPGEAS 180 GSNSFIMKQN NNNNNNDLHR PVSPRPFHSM YLSSTKGNNP QV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g082380.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215452 | 0.0 | Solanum lycopersicum chromosome 2 clone C02SLe0033D19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010316490.1 | 1e-164 | transcription factor MYB1R1-like | ||||
TrEMBL | K4BAA9 | 1e-142 | K4BAA9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g082380.1.1 | 1e-164 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 | Representative plant | OGRP12301 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 1e-29 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g082380.1.1 |
Entrez Gene | 104645780 |
Publications ? help Back to Top | |||
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