PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g082110.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 20954.5 Da PI: 6.6976 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.3 | 1.1e-12 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Solyc02g082110.2.1 43 YQPDICKDYKETGYCGYGDSCKFMHD 68 67789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.72E-10 | 40 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-13 | 43 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 4.8E-14 | 104 | 162 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 5.8E-9 | 120 | 162 | No hit | No description |
SuperFamily | SSF57850 | 4.08E-14 | 120 | 163 | No hit | No description |
SMART | SM00184 | 1.2E-4 | 121 | 158 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 8.09E-7 | 121 | 162 | No hit | No description |
PROSITE profile | PS50089 | 10.571 | 121 | 159 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 136 | 145 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNQYTDYKAG LRREHTISSE KAGGAHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG 60 DSCKFMHDRG DYKSGWQMER EWDEAEKERK RKLALGMLNE DDEDAEKSDE DDDDDALPFA 120 CFICREPFVD PVMTKCKHYF CEHCALKHHA KNKKCYVCNQ PTLGIFNTAF EIRKRMAAQG 180 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
5z58_M | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
6ff4_t | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
6ff7_t | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6611 | 0.0 | floral bud| flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g082110.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226510 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0172H10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066007.1 | 1e-137 | zinc finger CCCH domain-containing protein 1 isoform X2 | ||||
Refseq | XP_027770877.1 | 1e-137 | zinc finger CCCH domain-containing protein 1 isoform X2 | ||||
Refseq | XP_027770878.1 | 1e-137 | zinc finger CCCH domain-containing protein 1 isoform X2 | ||||
Refseq | XP_027770879.1 | 1e-137 | zinc finger CCCH domain-containing protein 1 isoform X2 | ||||
Refseq | XP_027770880.1 | 1e-137 | zinc finger CCCH domain-containing protein 1 isoform X2 | ||||
Refseq | XP_027770881.1 | 1e-137 | zinc finger CCCH domain-containing protein 1 isoform X2 | ||||
Swissprot | Q8GX84 | 1e-101 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0V0IA82 | 1e-134 | A0A0V0IA82_SOLCH; Putative zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | M1B2E5 | 1e-134 | M1B2E5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400035522 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4403 | 23 | 37 | Representative plant | OGRP5896 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-102 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g082110.2.1 |